Thursday, December 11, 2014

mtPhyloTree Creator

MtPhyloTree Creator allows you to automatically generate the entire mt-DNA PhyloTree (or a specific subclade) based on the set of mtDNA mutations provided.

Prerequisites:
Usage / Tips: Extract the download and place the mutations as a comma separated value in each file inside the data folder. Execute the MtPhyloTree Creator executable program and build tree. Then enter the mutations in the text box and plot it. You can export or save/open the entire generated tree or the mutations plotted on the new tree as a report. Try with a few files specific to a sub-clade and then go bigger. Currently, the data folder contains  13883 mtDNA files. You can remove them and place your own files or just add it to the existing list of files.

Screenshot:
 



Download mtPhyloTree Creator.zip (5.36 MB).

Source Code at GitHub.

License: MIT License.

Change Log
Version 1.2
  • Minor enhancement - expand/collapse tree, better error handling.
Version 1.1
  • Opening a saved PhyloTree doesn't work - fixed.
Version 1.0
  • Initial release.