Ancient DNA

Below is the tabulation for Ancient DNA processed from publicly available raw files and uploaded to GEDMatch for comparison. Processed files from raw data can be downloaded from Google Drive-1Google Drive-2Google Drive-3Google Drive-4 and Google Drive-5. All downloads are Build 37 (hg19). Procedure used to convert sequence reads are discussed in the blog, Convert Ancient DNA Sequence Reads to VCF format. If you want to convert SRA/FASTQ files yourself, you can use SRA / FASTQ to BAM Kit. The ages mentioned here for the below ancient samples are based on what the authors mentioned in their papers. I had posted my opinion as a blog on the accuracy of the ages of ancient DNA samples based on recent research in nuclear physics.

You can use the Ancient Ancestry tool to compare your DNA with triangulated ancient DNA segments or get shared DNA percentage using Ancient Calculator.

Sample NameSample LocationGEDMatchSexY-DNAMt-DNAApprox. Age by authors
Altai NeanderthalDenisova Cave, SiberiaF999902F

50,000 years
DenisovaDenisova Cave, SiberiaF999903F

30,000 years
Palaeo-EskimoQeqertarsuaq, GreenlandF999906MQ1aD2a14,000 years
Clovis-Anzick-1Montana, North AmericaF999919MQ-Z780D4h3a12,500 years
Mal’taSouth - Central SiberiaF999914MRU24,000 years
La Braña-ArinteroLeón, SpainF999915MC-V183U5b2c17,000 years
Motala-12Östergötland, SwedenF999917MI-L460U2e17,000 years
LBKStuttgart, GermanyF999916F
T2c27,500 years
Loschbour Loschbour, LuxembourgF999918MI-L460U5b1a8,000 years
Ajvide58SwedenF999924MI-CTS772U4d5000 years
H1c5000 years
Hinxton-2Cambridgshire, UKF999921F
H2a2b11300 years
Hinxton-3Cambridgshire, UKF999922F
K1a4a1a2b1300 years
Hinxton-4Cambridgshire, UKF999925MR-DF25H1ag12000 years
Hinxton-5Cambridgshire, UKF999926FH2a2a11300 years
KO1Tiszaszőlős-Domaháza, HungaryF999931MI-L68R35650-5780 cal BC
NE1Polgár-Ferenci-hát, HungaryF999937F
U5b2c5070-5310 cal BC
NE5Kompolt - Kigyósér, HungaryF999927MC-F3393J1c4990-5210 cal BC
NE6Apc-Berekalja I., HungaryF999932MC-P255K1a3a34950-5300 cal BC
NE7Apc-Berekalja I., HungaryF999928MI-L1228N1a4360-4490 cal BC
CO1Apc-Berekalja I., HungaryF999930F
H2700-2900 cal BC
BR2Ludas-Varjú-dűlő, HungaryF999933MJ-M67K1a1a1110-1270 cal  BC
IR1Ludas-Varjú-dűlő, HungaryF999929MN-M231G2a1830-980 cal BC
Ust'-IshimUst'-Ishim, SiberiaF999935MK-M526R45,000 years
Kostenki14European RussiaF999936MC-V199U238,700-36,200 years
RISE00Sope, EstoniaF999955F
H5a1~2000 years
RISE94Viby, SwedenF999956MK-M1221K1a2a4025 years
RISE97Fredriksberg, SwedenF999945
CT-Y1580K2a53590 years
RISE98L Beddinge 56, SwedenF999941MR-M405K1b1a3736 years
RISE150Przeclawice, PolandF999948

U5a1b13469 years
RISE174Oxie 7, SwedenF999943

W11521 years
RISE395Bol'shekaraganskii, RussiaF999949F
U2e13540 years
RISE479Erd 4, HungaryF999944MI-L1228T2b~2000 years
RISE493Sabinka 2, RussiaF999950MQ-L712C4a1c3214 years
RISE495Arban 1, RussiaF999958MR-F3105D4j1

RISE496Arban 1, RussiaF999959F
U5a1a2a3070 years
RISE497Arban 1, RussiaF999957
F-P142A2f2 ~2000 years
RISE499Bystrovka, RussiaF999952F
H5a1~2000 years
RISE500Kytmanovo, RussiaF999947F
U4d1~2000 years
RISE502Bystrovka, RussiaF999960F
U5a1d3140 years
RISE503Kytmanovo, RussiaF999961

U2e23328 years
RISE504Kytmanovo, RussiaF999962MJ-CTS3732C4a1d1208 years
RISE505Kytmanovo, RussiaF999953

U4a1b3391 years
RISE509Bateni, RussiaF999942FT2c4186 years
RISE511Bateni, RussiaF999967FJ2a2a4224 years
RISE523Kapova cave, RussiaF999966G2a13192 years
RISE548Temrta IV, RussiaF999968MR-L23U4~2000 years
RISE552Ulan IV, RussiaF999946MI-S12195T2a1a3940 years
RISE569Brandysek, Czech RepublicF999954H1af2~2000 years
RISE577Velke Prilepy, Czech RepublicF999951T2b~2000 years
RISE601Verh-Uimon, RussiaF999969MM8a1~2000 years
RISE602Sary-Bel, RussiaF999965MJ-M410C4~2000 years
Bot15Rio Doce, Minas Gerais, BrazilF999963MC-PH3092B4a1a1a~1600 AD
Bot17Rio Doce, Minas Gerais, BrazilF999964MC-Z31878B4a1a1~1600 AD
Kennewick ManKennewick, Washington state, USAF999970MQ-M199X2a8358 years

Below is the tabulation for Ancient DNA processed from publicly available raw files but not uploaded to GEDMatch due to less SNPs that are common between DNA testing companies and the sample. However, you can use other tools autosomal tools to do further processing.

Sample NameSample LocationSexY-DNAMt-DNAApprox. Age by authors
Mezmaiskaya NeanderthalMezmaiskaya CaveF

29,000 years
TianyuanTianyuan Cave, China

R40,000 years
Afontova Gora-2South-Central Siberia MR1?R17,000 years
Motala-1Östergötland, Sweden FU5a17,000 years
Motala-9Östergötland, Sweden FU5a2 or U5a1f1a17,000 years
Motala-6Östergötland, Sweden MU5a2d7,000 years
Motala-2Östergötland, Sweden MF-P139U5e17,000 years
Motala-4Östergötland, Sweden FU5a2d7,000 years
Motala-3Östergötland, Sweden MI-M258U2e17,000 years
Hinxton-1Cambridgshire, UK MR-L151K1a1b1b2000 years
Ajvide53Sweden FU4d5000 years
Ajvide59Sweden MI-PF3796U5b2c15000 years
Gökhem7Sweden FH5000 years
Ire8SwedenMI-CTS6343U4d5000 years
StoraFörvar11Stora Karlsö, SwedenMI-CTS4077U5a1f1a7500 years
Gökhem4SwedenMCF-M3690H5000 years
Gökhem5SwedenFK1e5000 years
Ajvide52SwedenMHIJK-F929HV0a5000 years
Ajvide70SwedenFU4d5000 years
NE4Polgár-Ferenci-hát, HungaryFJ1c5050-5290 cal BC
NE3Garadna, HungaryFX2b5010-5210 cal BC
BR1Kompolt-Kigyósér, HungaryFK1c11980-2190 cal BC
KO2Berettyóújfalu-Morotva-liget, HungaryFK15570-5710 cal BC
NE2Debrecen Tócópart Erdõalja, HungaryFHV5060-5290 cal BC
V2Vratitsa, BulgariaMU2e1'2'31500-1100 BC
M4Borum Eshøj, DenmarkMB21350 BC
K8Krushare, BulgariaMR450-400 BC
NA43Laguna de los Condores, PeruMB4b'd'e1000-1500 AD
AusAboriginalWestern AustalianMF-M235O1a100 years
NA41Laguna de los Condores, PeruML31000-1500 AD
P192-1Svilengrad, BulgariaMU3b800-500 BC
T2G2Stambolovo, BulgariaMH1c9a850-700 BC
NA42Laguna de los Condores, PeruMD11000-1500 AD
NA50Laguna de los Condores, PeruB4b'd'e1000-1500 AD
NA47Laguna de los Condores, PeruL31000-1500 AD
NA40Laguna de los Condores, PeruL31000-1500 AD
NA39Laguna de los Condores, PeruMB21000-1500 AD
Feld1 NeanderthalNeander Valley, Germany
42,000 years
Sid1253 NeanderthalEl Sidron cave, Asturias, Spain
49,000 years
Vi33.16 NeanderthalVindija cave, CroatiaF38,310 years
Vi33.25 NeanderthalVindija cave, CroatiaF
Vi33.26 NeanderthalVindija cave, CroatiaF44,450 years
Tyrolean IcemanTisenjoch Pass, Oetztal AlpsMCT-M58255300 years
RISE1 Oblaczkowo, PolandC-IMS-JST029149K1b1a 4117 years
RISE21 Karlstrup, DenmarkN1a1a2 3092 years
RISE42 Marbjerg, Denmark MCT-CTS2711H2c1 3681 years
RISE179 Abekas I, Sweden MCT-L1462K1a3 3556 years
RISE207 Angamollan, SwedenCT-CTS4650J1 3130 years
RISE210 Angamollan, Sweden MCT-CTS1217T2a1a 3105 years
RISE145 Polwica, PolandMF-M89H6a1b 3677 years
RISE47Sebber skole, DenmarkMF-P146I 3153 years
RISE61Kyndelose, DenmarkMIJK-L15J1c4071 years
RISE71Falshoj, DenmarkH3b 3701 years
RISE139Chociwell, PolandU2e 3645 years
RISE154Szczepankowice, PolandFK1a4a13522 years
RISE109Wojkowice, PolandFU4b1a33544 years
RISE240Sukhaya Termista I, RussiaFU5ald14160 years
RISE247Szazhalombatta-Foldvar, HungaryMI-L1228H113372 years
RISE254Szazhalombatta -Foldvar, HungaryGHIJK-Z12203J1c93631 years
RISE394Bulanovo, RussiaFU2e1e3532 years
RISE175Abekas I, SwedenMF-M235T1a13025 years
RISE486Remedello di Sotto, ItalyMI-CTS4272J1c1b3595 years
RISE487Remedello di Sotto, ItalyI-CTS6231H2c14557 years
RISE374Szoreg - C (Sziv Utca), HungaryMG-F3344T2b3402 years
RISE412Noratus, ArmeniaFU4c1a2885 years
RISE408Norabak, ArmeniaJ-CTS8974I52908 years
RISE396Kapan, ArmeniaFH6b2879 years
RISE416Nerquin Getashen, ArmeniaJ-Z1842K1a17a3259 years
RISE373Szoreg - C (Sziv Utca), HungaryFK1a2a3476 years
RISE413Nerquin Getashen, ArmeniaMR-M415T2c3493 years
RISE392Stepnoe VII, RussiaMR-P233J2b1a23626 years
RISE489Remedello di Sotto, ItalyMI-PF3736X2c4185 years
RISE386Bulanovo, RussiaMR-P231J1c1b1a3775 years
RISE397Kapan, ArmeniaR-L23T1a22807 years
RISE407Norabak, ArmeniaCT-M5805H8a2827 years
RISE423Nerquin Getashen, ArmeniaME-CTS677T2a3038 years
RISE431Leki Male, PolandMK-M526T2e3762 years
RISE512Kytmanovo, RussiaMK-M526U2e13119 years
RISE525Kapova cave, RussiaR-M306I
RISE494Sabinka 2, RussiaMR-P245I4a3081 years
RISE484Erd 4, HungaryT1a1
RISE446Bergrheinfeld, GermanyMR-M207U5b1c24015 years
RISE492Sabinka 2, RussiaMR-FGC5628D4b1a2a22257 years
RISE550PeshanyV, RussiaMR-M520U5a14312 years
RISE480Erd 4, HungaryU5a2a
RISE483Erd 4, HungaryCT-M5751H2a1
RISE276Trundholm mose IIMR-L265T2b2525 years
RISE516Verkhni Askiz Village, RussiaFH6a1b3725 years
RISE349Battonya Voros Oktober, HungaryFT2b33588 years
RISE371Szoreg - C (Sziv Utca), HungaryFU5a2b3653 years
RISE471Untermeitingen, GermanyMR-P310J1c1b
RISE596Velika Gruda, MontenegroFX
RISE600Verh-Uimon, RussiaMQ-M25K2a5
RISE434Tiefbrunn, GermanyP-P239U44161 years
RISE435Tiefbrunn, Germany
J1b1a14094 years
RISE436Tiefbrunn, GermanyMCT-CTS3662N4124 years
RISE391Tanabergen II, KazakhstanN1a1a13612 years
RISE567Knezeves, Czech RepublicU5b2c
RISE595Velika Gruda, MontenegroU5a2d
RISE598Turlojiske, LithuaniaMR2590 years
RISE555Stalingard Quarry, RussiaR-CTS623N1a4082 years
RISE553Afontova Gora, Russia
P-F91F1b2731 years
RISE515Verkhni Askiz Village, RussiaFA83810 years
RISE547Temrta IV, RussiaMR-CTS8728T2a1a4175 years
RISE560Augsburg, GermanyMR-P234U5a1a1
RISE562Landau an der Isar, GermanyFH2a1e
RISE554Afontova Gora, RussiaR-S504F1b12782 years
RISE507/8River Kuyum, RussiaU5a1a14423 years
RISE559Augsburg, GermanyFH
RISE563Osterhofen-Altenmark, GermanyMR-P310K
RISE568Brandysek, Czech RepublicH
RISE566Knezeves, Czech RepublicMR-P310H2a
RISE586Moravska Nova Ves, Czech RepublicFk1b1a2
RISE510Bateni, RussiaFJ2a2a4040 years
RISE564Osterhofen-Altenmark, GermanyMR-L51HV
RISE524Kapova cave, RussiaR-PF6494J2b1~2000 years
RISE546Temrta IV, RussiaMR-PF6482U5a1d2b~2000 years
T*P1Parkhai II, Turkmenistan5000-4500 years
N*P1Kulubnarti S, Egypt2000 years
AB40Vat Komnou, Cambodia2150-1750 years
VN48Man Bac, Vietnam3800-3500 years
AG037Ain Ghazal, Jordan10000 years
BAR100Barcin, Turkey8400 years
NG21-10Serbia, GomolavaCT-M5751R06600 years
H*P1Polgar Ferenci hat, HungaryN6300-6100 years
Hung2*P1Polgar Ferenci hat, Hungary6300-6100 years
PF811Polgar Ferenci hat, HungaryN1a1a26300-6100 years
Black Death Victim #8291East Smithfield cemetery, London, UK

H11348 AD
OasePeştera cu Oase, RomaniaMF-P158N37,000 42,000 years